Scaffold Ga0194048_10060130

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10060130
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1512
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F007691	Metagenome / Metatranscriptome	346	Y
F036238	Metagenome	170	Y
F049617	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100601301	F049617	AGG	MNSEDIGLPPHLQRLVNAGVNGLDIMHGELKNLMLIAEQDLADALEQEERSEEAMDS
Ga0194048_100601303	F001460	N/A	MQICGNRGRLMLGYTEEDLNRMINAIHDAKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFD
Ga0194048_100601304	F007691	N/A	MDSINDLINEIYMDNEQHLEYMENMNGGDCDCLIHITLNTICKYAGIEVG
Ga0194048_100601305	F036238	N/A	ITYTRRGGSIMGDRANFAFKQTDTNTIVLYGHWAGYQMLNNLAMAVDRARGRWADESYATRICISQLVGDQWNSETGWGIQVNSISDNEHKIPVINWGTQTFSLHEETPHSFDSQIRGVNDEPIFTMSLDNFVKKYSAALV