Scaffold Ga0194048_10053842

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10053842
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1617
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F005558	Metagenome	396	Y
F085348	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100538421	F085348	AGG	MQPTGIAIKVTGKDGKVSYPCYEAYGWERINAVINGTLAIEHVAMVEIVDINMKREVA
Ga0194048_100538424	F005558	AGGAGG	MNDAISWSELAELTHVTQVERFGFCTCEDLEPHEYPYTDCIKENI
Ga0194048_100538425	F000821	AGGAG	MNEEYLAAKATLCLNQAEIDLKQQEIARAIKNLERANAALSRLFNMEEGEEEDNE
Ga0194048_100538428	F001477	AGGAGG	MSNIYTIHAKKSPLILLYEVVDEEGRAEWGGNNAEHCMQWLSVAPTGSRVLVSGWESDEEDAHLVGQSLDITEIIKAASL