NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10042259

Scaffold Ga0194048_10042259


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10042259 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1869
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F009685Metagenome / Metatranscriptome314Y
F013414Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100422591F013414AGGCGGMKTREIKVAEQLVNLTEDHWFNAAILARYLTDQPYYTVDRIIELLAQTINRYAARHNDELDTEDGIYNSGMTSEGLFLANELNKTLNELIKTYKWENIKLPADPDKFIRRLPKIEEQSYRHSWLHDKDTRDPVLMSHPFI
Ga0194048_100422592F000852AGGAMQTKREYLKAQGITVGVRGRFSGAAKVAIQEAISKGVTFSDPQPVTNKAK
Ga0194048_100422593F009685GGAGGMKMSDQYVDTILAEAQRLLWGGSETENIEAHNLISKLIKDRWELKNLS
Ga0194048_100422595F001019AGGAGGMMSYEPSLEILEMEYSCSPGGVDLFEVYDKTDIPLSVPIYETENLTEAVQFCYNLGKDFTVRTLAEWNERELSYVS
Ga0194048_100422596F000263AGGMNNEDIGLPPHLQRLVNSGVSGLDIMHGELKNLMLMAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGEKEGQK
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