Scaffold Ga0194048_10028276

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10028276
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2376
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006112	Metagenome / Metatranscriptome	381	Y
F013757	Metagenome / Metatranscriptome	268	Y
F014848	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100282761	F013757	AGGA	MLTNCIAKAKLVYNKKLQAYKLVVAFNAHKQFKKDKYGNEKVVYAFPTQAKCAYVSGDLLASNLQNELAAVLPIVYSTIRTN
Ga0194048_100282764	F014848	AGGAG	MTRYYDTIAEFERDGYDIIVDKTYEDLSPGDCFDDSQFDIAEINHNIEHGNLDWFQLRVRVLVEGLELGSAYLGGCLYEDAREVLTDGTAEDFIAQAMVEAKSQVYRLSRKFTELSYAVDAEGV
Ga0194048_100282767	F006112	AGGAG	MKQNYTMYIYKRDRRTKTGERLFNTTVWADRTLEGMEREMRELARDLYPGTDWRFEFVPTMKTVKNLMSGKEIQIPHDTPRSCDPSSELYWSM