NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10026661

Scaffold Ga0194048_10026661


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10026661 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2459
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F050981Metagenome / Metatranscriptome144N
F078382Metagenome / Metatranscriptome116N
F083886Metagenome / Metatranscriptome112N
F100656Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100266612F078382AGGMTLRSAMRQTLDLLVVMLAVLLSRTLWVTIGGLYVVWTVHWSDVATLYTLDNAAQIQSFTQLALCRYGLIGSIVLGYLGFTRGSTGVAGYVIDQLNPKDK
Ga0194048_100266613F050981GGAGMNWFALILLSVATVCGQTTDDEIRKISPGDIVLTLNHMRTLITEAQDAADKAIASEKAMQAKLVDATNALIDSQSQLMKVDQDIRNLQAQTDEQTRIAAGAKADAVKAQRLADHRGNLLGWLGAGLLCIVCLKLTSILPPPYGFLLPVAAIPAGYWLARLLL
Ga0194048_100266614F100656AGCAGMTTLKNSLILLALCMLCACEHNRPKPSPAVVSVAQVKASTASASVAVRSAIDDSKGTIINIQKIRTAQDRVDAKSIIILRWLELQR
Ga0194048_100266615F083886N/AMLRNEIFGDLWRGSVGIAGSWIAVISSVHEDIDNIAKTAGMILGCLASLAMFISLCQRIYHNWQTRKWEGVIFKQTDDDLKK
Ga0194048_100266616F022372GGAMSTTTITIDVAFLTTEQRDAATLLFARSGGWQPLVDGEPNPVSAEDYGVTMIANYLRSGVASQSAYDAQIAAAQEVAELLEGVTVTTPAEFDALFPTPPITTPV
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