NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10020270

Scaffold Ga0194048_10020270


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10020270 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2894
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021263Metagenome219Y
F022373Metagenome214Y
F054583Metagenome139Y
F056314Metagenome137Y
F075854Metagenome118Y
F090062Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100202702F090062GGAMLTTEQLRRKARVIYNNDMVPEHTNRHNQRKWVRAVLRLGDHWLTAKPLGRLNATESNS
Ga0194048_100202703F022373GGAGMQPKVILEFTYPDDEDRLLFAIKGPEMYRALTNIKMAVTGSFSTKADLNAVLDRVQDLTDQIFEELGE
Ga0194048_100202704F021263AGGAGMTNEERERDLTLADLQDENRRLKRVEQAAQAVVKSFSNSIDYNTWDEALDKLEAVLKEKS
Ga0194048_100202705F054583AGGAGMRGTGFGNVLASNIAALRGQQRNDKRMSQKWKMCWKCQKDKTPVGGYLRITAGLHKFICKDCMDAKEKANGKTE
Ga0194048_100202708F056314GGAGMTSRTHTPEDVKTIESKYSLNIWEKALGWRKRQMIIKQLDPVTNQIRNNTLEEVAKEFDGMKNGGDTTESFAAYVRSMKRA
Ga0194048_100202709F075854AGGAGVPRPKPPSPLKGRNMRMSDVEWLMFQELGGAEWLRQFVRKKAKLPINHYEKQVEDERMQKRIL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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