Scaffold Ga0194048_10015548

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10015548
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3383
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F007644	Metagenome / Metatranscriptome	347	Y
F031497	Metagenome / Metatranscriptome	182	Y
F053291	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1001554810	F031497	GAGG	MSKTPEIKVAESLVNLMDDHWFNATIFGHYLAQQPLYTIDRIMEMIVSVISEQSKMLHVYSIQGSTSEGLLLANELNECIKSYQESNQLNNLKLPSRSYKVKREEKRIHTFGWIEEEDPF
Ga0194048_100155482	F002387	GAGG	MSDPHGIIDPYRKGGGIMASFLEDVNQMVIDAVYQEIAEQLLENWINSNLDEGQYYADKQFAWMSDDKFIQSEFNKFYNLTPIDEDYFE
Ga0194048_100155483	F053291	GAGG	MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLQTMVKYMEAIEC
Ga0194048_100155484	F001460	GGAGG	MLGYTESDLNKMINAVHDAKLFYLRYPSDLMDKTELRTDLEMAVSFMQGLWAEGYFDHTD
Ga0194048_100155485	F007644	GGAGG	LTTPTKSSKFLEYMKIHLISLNQDLEMNPESINVIDIPGQIYATEHLLSVATDIMNSTNERYDNE
Ga0194048_100155486	F000263	AGG	MNNEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQELSDAQAIEDESEEAMDSMARTEATGRLDALVELYQLTYQLSFAIGEAYDRELKAGK
Ga0194048_100155488	F000441	GAGG	MKMSDTYINDQLNKAQQLLWGGSETENIEAHNIIAKLISDRVEQADLS
Ga0194048_100155489	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKVALAEAVAKGVTFTAEPLNKAK