NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10014402

Scaffold Ga0194048_10014402


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10014402 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3527
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F078391Metagenome116N
F095140Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_1001440210F078391N/AMNDLLPAMGRFFANEWDGFYQRVTVNVSVTTLGILTPLVHAELNMWLQTTMYVSGLIVLIWNFWGAQKELKRKRLRDEEAAAEWMRVAQAENKFPKRKPNEL
Ga0194048_1001440211F022372N/AMSTTITIDVAFLTEEQRDAATLLFARSGGWQPLVDGEPNPVSAEDYGVTMIANYLRQRVSEQSAYDAQITAAQAVADLLDGVTVTTPQDFPTPPITTPV
Ga0194048_100144029F095140N/AMNTKNLAGYGSIVMSLLTALAAAPYSLGEVAMIIPPEWKQRVFVAGAIATLILRVIRDNTTHPTQPSQS
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