Scaffold Ga0194048_10007483

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10007483
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5107
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F010463	Metagenome	303	N
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N
F074559	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000748310	F033350	AGGAGG	MSVVDVRVRETKWSMLLWKTIKEKPYNDERVLMDCGGEVVVGRFIDGSFVSRSWGHSENDVRLWASWPKAPKW
Ga0194048_1000748311	F023585	AGGAG	MSVKRLSLVDEFHGLVSRRLKDLFKRLNHAEVENFKDIISHLDYSHRITKELLERAKKYQKRDAEKTKK
Ga0194048_1000748313	F010463	AGG	VIAHPQELVLAATIHRVKLCEDRIKEFEQMVSTLTAQMAQNRTELASKGLATLVMGTTTPLDIPRELRPTFGKYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIAHAWGCHHSSIVNAKSKNFTARKSSGRAIK
Ga0194048_100074832	F074559	AGG	MNAKNPWQKLLSEHIKDKFAPPQPAGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIVARKDHRVIRNLKIFKILPTKHPHK
Ga0194048_100074834	F005846	N/A	MTSFPLPARPVGSAVPALHDEFSEGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTRTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDLQPNKLLRFVRLAHYKINAIWEEMNFQNNKAGEVVWEGFVMKSLDDGKYPYITNPSYCSPSWQKQRIRW
Ga0194048_100074835	F005702	GAGG	VIIFLVVFFGLLILQGVRIFAKHIDQQNYDRRQFYLYVAAELDKMDKIVAEGNQPKKPKEPELLLPTKNWVGKN
Ga0194048_100074839	F023833	AGGA	MKSHSELIQDILTDVRSKASDLERERCADLVQQLADGTEDAVITGILNEVVLAIRRLGDVSR