NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194048_10006830

Scaffold Ga0194048_10006830


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10006830 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5379
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022372Metagenome / Metatranscriptome214Y
F078391Metagenome116N
F095140Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100068302F022372N/AMSTTITIDVAFLTTEQRDAATLLFARSGGWQATVDGEPNPVSAETYGVTMIAGYLRQRVSEQSAYDAQIAAAQATADLLDGVTVTTPPDFVTPPITTPV
Ga0194048_100068303F078391N/AMNDLLASMGRFFANEWDGFYQRVTVNVSVTTLGILTPLVHAELNMWLQTTMYVSGLIVLVWNFWGAQKELKRKRLRDEEAAAEWMRVAKAESHFPKRKPNEL
Ga0194048_100068304F095140N/AMNTKNLAGYGSIIMSLLTALAAAPYSLGEVATIIPPEWKQRVFIAGAIATLILRVIRDNTTPTNPTQPTP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.