Scaffold Ga0194048_10006107

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10006107
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5723
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005293	Metagenome / Metatranscriptome	405	Y
F071998	Metagenome / Metatranscriptome	121	Y
F088891	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000610712	F088891	AGG	MKLLLTLTVLLVGCNAPEPVDQTQVTQTFVDSKIRFVKIDNCEYIVTSFQPLVIAHKGNCKNHKQ
Ga0194048_1000610714	F005293	N/A	MNDNMTFFVPTTDDLIGYISDTHKEINGFRPRPNWSELSYEQLDKWGRELSAEVVAYRKQEAIRNRIARNLRRAQLRAWVEKKKGYFTPTTFTIGSIVTV
Ga0194048_1000610716	F071998	N/A	MNTTLIDQAIKKFPKAKRIAVENFTMGYDTLNMEASMNLEADSRCYSWNSHTVNAIRWVLNHKHAFKTMAS