Scaffold Ga0194048_10005529

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10005529
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6026
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007170	Metagenome / Metatranscriptome	356	N
F009888	Metagenome / Metatranscriptome	311	N
F012219	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100055291	F012219	AGGTGG	MNLQNFRIQKEPAPSTDWLVFGDITDDNGQPLGTFGPNGTSVNIWWVQQDETFQAGIVNQFAVIMAQQIASGDAE
Ga0194048_100055294	F009888	AGG	VAIIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGATFTNINTGAAYSFVSGSVTLTKQYSAQGIMSVLNPAAYPTAAMVRLTVSFTVSTTVRRFGPLEIEVLAP
Ga0194048_100055296	F007170	AGG	MAFEPAVIEQWIYETLSGDVTLMDLLSTSNQPSGYQQGIYNTVAPQVDPVSRRPPQLPYVVFSRAGASGDDEDALCGARVFTFPNYRITVWDSESGAMSMSGIQTIMSRIDTLLDNQTVTTTIPRLYVRRTSTDQTFSLSDGGRTDYGVTAVYRCLTQQ