Scaffold Ga0194048_10005208

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10005208
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6232
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002071	Metagenome / Metatranscriptome	596	Y
F024549	Metagenome / Metatranscriptome	205	Y
F038205	Metagenome / Metatranscriptome	166	Y
F043387	Metagenome / Metatranscriptome	156	Y
F057310	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000520813	F038205	AGGA	MGNILEILAVECDECGGAGFVFWGDEKNYDVESCDCSLDKWVI
Ga0194048_1000520814	F024549	N/A	MYKLFTYYDGNLEFTHQFADALQAFEAFAKCYDVGFAKEYATYNLTMPNGKMYTKNFNRIGLVSVK
Ga0194048_1000520820	F002071	AGGA	MEIGTTYTTAQSGITGVIKAIDNHPSGVNRILLDVNGTERWTSVSAK
Ga0194048_100052086	F057310	GAGG	MKITYTVWQGSLNKGRLTASKMSEVIDTIKELNTLGDKLKFEALVHTVEESN
Ga0194048_100052087	F043387	AGGAG	MMTKWDTIQADIADAYAYLDEAEKLDKHNEESLFDEDMISMDEVIEKGLTLDWEEAE