Scaffold Ga0194048_10005170

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10005170
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6252
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006419	Metagenome / Metatranscriptome	373	Y
F012212	Metagenome / Metatranscriptome	282	Y
F051705	Metagenome	143	N
F098688	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000517011	F051705	N/A	MKITATFNDEEEAIKAIHSGYAWQTLHEINEILRQNRKHDLPFEQVVSKIQASLNDALAMIYPD
Ga0194048_1000517012	F098688	GAG	MSKRDLALDSLTRICEIQQRLINQLIAVEQSSYARGYEDGMAAQIEIDISLNEMVQHENHSDI
Ga0194048_100051702	F006419	AGGAG	MNYAIVKNEVVVNLIEYNEQPATPPPGFEDGHIAVQADNANIGWNYANGQFTDPNPSTSEASAPLSLADRILANPTELAKLKSALGL
Ga0194048_100051704	F012212	N/A	VIDQIASADSPWPNTETKTVLVCRLPKKDDKPSTNEFVDKNGRICRWVVVNRK