Scaffold Ga0194048_10003377

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194048_10003377

Scaffold Ga0194048_10003377

Overview

Basic Information
Taxon OID	3300021519 Open in IMG/M
Scaffold ID	Ga0194048_10003377 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7850
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.697	Long. (^o)	-93.722	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F045701	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100033773	F000843	N/A	MPLYQVPPTHLPQIWPIAAPLLQKAIDLDPTAITIEQAEYAVRTGRSFLLIWDEPDVGITGAVTVDIIDYPRERVAHVNLMGGKGVVRDYVFEEAMNWMRGMGATKAQCWARGSLVDMYKKMGMENTHQVMRIDL
Ga0194048_100033775	F045701	N/A	MMPPVREKIYEDADARVSCDHIFNRTTAALHLHLNPGAWSPSKFKRYKGIFAGQILPFLRDKSYKEVYATPFENDVKAQKLIAMFGFQEFARKQGHVLMKREI

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