Scaffold Ga0194048_10002589

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10002589
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8973
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032299	Metagenome / Metatranscriptome	180	Y
F078800	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_100025898	F032299	AGGGGG	MPKITQSGKKQYETQQVTANQIATPQYGETAPTMQDVIKSANARGQSRHEMKNTEVADVDVLPESAMMARNEMVGVKNNGYLAKKGLVFGVNAFYNSLAPGMDIEDQENSDIREMKMNVYEGGMGFPGDGWTSRTEGSPTSSEKDMGRVAMTNKIGSARN
Ga0194048_100025899	F078800	AGGAG	MPKIVQEKFQLNFPQDEEPHGWLTDTESRSKKQMPGREGRSGGDYRSRSVNNTLFANSLPPGTDIEDQEFSDIRQMGISIAGNMPQGCATGDLTNGEVNAVSLRTGFDKKALLQTDDEYTREHNDAFYDDVGGFIERNNYLDRM