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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021519 Open in IMG/M |
| Scaffold ID | Ga0194048_10001383 Open in IMG/M |
| Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12058 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (19.23%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Ontario | |||||||
| Coordinates | Lat. (o) | 49.697 | Long. (o) | -93.722 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009945 | Metagenome | 310 | Y |
| F011473 | Metagenome | 290 | Y |
| F016922 | Metagenome | 243 | Y |
| F026794 | Metagenome | 196 | Y |
| F037053 | Metagenome | 168 | Y |
| F057879 | Metagenome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0194048_1000138313 | F011473 | N/A | MNWKKYITDPSTKRPKRGAISRIAALLGTHYGNVRRMFDGIWTPTDEEANGLRAIVQARTNLAPKKRSDAGKKRGEYRKRAVAKSGVAAPQLKGLRSAKKTARKLN |
| Ga0194048_1000138315 | F016922 | N/A | MSNSIRINSRAIRCVADAEGATEYAIRCAGRDFLVTAHSRLEADIAVEYYRAPEADESQPDLLK |
| Ga0194048_1000138319 | F057879 | N/A | MSAEKSSEETNPRDTVRPEPVPAGVEQEPESPFAGASQVPPWEL |
| Ga0194048_1000138321 | F026794 | GAGG | MPDFPHSISDRDFNVTASQLRADANDAREATRGEVTFDELDRRYADPISREEMIPLLNFITAFCEGRKVWCYEMKTRHGRPMPTWTPIESWDGHFRPECLSLEYRTDNPFATE |
| Ga0194048_1000138323 | F009945 | AGG | MITALAIFKRTHGVATHRKAGAGHRYPWVAYFERVTMKDGTVRWFSDIVNEFSWDALERRNKWAEGADEESACRKLASLNGIPWPAGEPKKRKAKP |
| Ga0194048_1000138324 | F037053 | N/A | MTTPTVDEIIADLESRGLGWRLDHTGRLIEARVWDWPTVIGRYRPHTTEPLAKMLATAAFQVDWTKYPVKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |