Scaffold Ga0194048_10001074

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10001074
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13559
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F012433	Metagenome / Metatranscriptome	280	N
F025225	Metagenome	202	Y
F081046	Metagenome	114	N
F086811	Metagenome	110	N
F088509	Metagenome	109	N
F093506	Metagenome	106	Y
F104721	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000107410	F088509	N/A	MTSIERQLEESLATALAGVSGVNIYKSDTKGARILPSIVIQCSIGSEEIIPYSGVFRCPATIIYATRADTTTRTAFDSKFQSILQVMYQNPNLASVLTTATLKVFLANVTSESSDIKSENRTWSKSLFLDLSCTSI
Ga0194048_1000107411	F086811	N/A	MTTPQFKIEDALASLLTPISGLNVFVSNRTGSRLFPYVTIKASLGKQYIAPYSGVFEVSVEINYSDSAAKATQADFDATYYNVFSSLYSPTLTLAEKVQDKVTDLKIFMGRITSQSPTIRADKRAWQRGLSLSFIVTPDENADGLREYDFSDVFNSFYLGTI
Ga0194048_1000107413	F012433	GAGG	MSSDQVADLRERLARIEERQTNIISILERHTSELAQWSSKINSKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR
Ga0194048_1000107416	F104721	N/A	MQEKILYTRNIKLASVLATFGIPFREKEPMAVIEDADDKNRRSVTFFFNDLPDGLGGRIVDLWEKGWSAITNHDDPIAYCRAVLENRERLLDAINNATPLVKKQFGKATLLVSKNASPELRKKLSKYL
Ga0194048_1000107418	F025225	GGA	MITIELLNQAQFVHKLQEYQKVSRKNMAKVINDKLGDVAVTAIGTTYRTSAAQIASELQRVEGKVITKKVFKPVKMTKSGKIIKRKIGEFNVGYKAKSVSYAGTYKLVNWLLKNRGLPTLGKTKLGLGGLGMGNKPGTIGALARRLVAGRKRSVNYIRNGWAAAAAVFGKRTNLVRGDYSKEAIKRLGGGVMADDKNSRMEGIIFNRAGDKDTRYFPVRKRAISGAVKVGMPGLKMAIDKVMKDMAVYLARKNKEASDKLKL
Ga0194048_1000107420	F093506	N/A	LLNKDKTMSATIISNISGFDYEPDITTDNGRDGISSFQFSVVGTFKALSSSFALDEEIKSVPDQPTTGSFRVVRRNMSHIAGAVSNGLYRLEVSTEGGSGNNNLYVLETSYQYQREILSGFVRTPTQDLAVNYICEWLSPTATITTNSQTQDVTDVQNRAKQFLSTLVVQIIRDKPKTIAPIGTVQYPVLGPSIDKNTMNITGSSVEKAGGLYRVRASATKGQMQLS
Ga0194048_100010745	F003049	N/A	MKNAKQIIGCRKSKKAENTKGLGIIRFGKSRPDPTKYVKVDITYDEKAEKDLYECGMLALKHDKEAVIQYVIVKALTRYAKCKK
Ga0194048_100010748	F081046	GAG	MIPKTIKYSQRLGDIIRCLPACKYLADQGHEVFVDCLPQYHGIFEMVSYAKAGNKGDVIDLEIWPNKYQEYRFSNKTWTEFVYSHSAINKADPTNIFFDKLDDAPAKGFPEEYNMVAPFGISQGHKRDPLQIIVEARKKCGEKNFFVLCPPGMEINGLATYTAPNIPELARAIRGASEFWSIDSGQMAIAAGVRKDKRVAYFPQTNEPFDKDNIFIWDSVEIN