Scaffold Ga0194048

Basic Information
Taxon OID	3300021519 Open in IMG/M
Scaffold ID	Ga0194048_10000566 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0194048_10000566 Open in IMG/M

Source Dataset Name

Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18042
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (86.11%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18042

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (86.11%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.697	Long. (^o)	-93.722	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Ontario

Coordinates

Lat. (^o)

49.697

Long. (^o)

-93.722

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F040987	Metagenome	160	N
F068205	Metagenome	125	N
F094793	Metagenome	105	N
F096503	Metagenome	104	N
F100258	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000056610	F008860	AGG	MSSFVKSDTRTPVPGDIVFSHSDGWMAKCIRFAERLRWRKGSYWNHACVISRVDQDGTAYVIQAQLKGVSEARLDSVGHYVVLEPPHGVNRNKVLAFTKMQVGSSYGVLSILSIMFDIISPDWFASIRMPRTWICSAVTGEALRYGGWLHDWDDVYCITPSQLFNSLVE
Ga0194048_1000056618	F096503	AGGAGG	MIKMSYRQGRKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAFITKR
Ga0194048_1000056622	F094793	AGG	MNNRDRISRDVERSLKTLNTLTPALVADLVRRAGTRAMPEKSASAGPKGKGTHSDPTLAAVIRKMSGDTSNDPIYEAVRTIALTLNDIALLTQLIDQQVRFVTEGAERQKESSIVYCEACNREVSRTPKDRLRSGYCMACYAKWTRQQRPYRSTFEAQIKQELLETP
Ga0194048_1000056624	F040987	AGGAG	MQSTTLKRGPEERKVTLYKNGSAFLITCEVLASNFHKEGHTETLYTPDTEPQADFLYGGAVRFLQGYQYEVVSECLA
Ga0194048_1000056628	F100258	GAG	MLTVEQITKGIQTEMRKVAECVDELATAGDTAAQTDVAYEIAKARVSLRIVAESPEKLTVSEIGYRCLEETQDEYLAYLIARNRHDTVKSALRASQSRLDALRTLMTSLRVAGG
Ga0194048_1000056634	F068205	AGGA	MTVVAGLVTPDGCWIGADSLSSTDDGLASLIATPKVGRFGNLLLGYSGSFKVGAMYFKVAGRSHNPTLEQLLESVKLPDDLKDDWELLAIEHGHLYEITSNSGPLEARKDHDGIAYGAIGSGAAPALGSLFTDHEDEGSLYQALEASAMHTTNVRSPFLVLSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194048_10000566

Overview

Ecosystem & Geography

Associated Families

Sequences