Scaffold Ga0194048_10000522

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10000522
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18677
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (87.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F035727	Metagenome	171	Y
F066703	Metagenome	126	Y
F086807	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000052212	F086807	GAG	MTHRIVVNVETGVTTQVEYTAEEQAVHDAAVAAQKAAEAAAPTEPAS
Ga0194048_1000052225	F005737	AGGAG	MFDIETYKKPTDWAQIALYAVSVAAIVVVALDVLVWRASC
Ga0194048_1000052227	F066703	GGAGG	MAITNFTQQKDDSFDEIQRLMCSVHGCPNRWSVHSDGEKPKCSKHQWQRTEKKPAVQSWHEVGNEF
Ga0194048_1000052228	F035727	GAG	MTHERLVANSILSRLKDGEEFSQSVIRTALIDAGDLAPDRGQGLDQTLQEEDSGGGKSRGIGLVAENLIRRSKAAWAESC