Scaffold Ga0194048_10000491

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194048_10000491

Scaffold Ga0194048_10000491

Overview

Basic Information
Taxon OID	3300021519 Open in IMG/M
Scaffold ID	Ga0194048_10000491 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19261
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (37.04%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.697	Long. (^o)	-93.722	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051687	Metagenome	143	N
F067392	Metagenome	125	N
F094889	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000049121	F051687	N/A	MRNSGFKMDISGIRRKQKELASIPARIFKPEISNYLLRPSLNKARAATPVRDLATIRENQVGKPNSQYAKWKARGGGQGVTKAQFLADRAPARFLFQLQWVQVGYSLGVNVTASAAVLSATTRNHDEPDIPQGRGQWHGGQTKLTASISVPFLDEPERKYKPFTGQGILTPIMAAQFPVFNRACERKMKRVVAAIARS
Ga0194048_1000049124	F094889	N/A	VSDATLDEHADALDSERKDRAVAMLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGECPIAAIPDFLWYITKDFAFGDDERRKAFLAAILNLDVDEAREGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVLDTPLRILYQLIKAADDARGCTMQNRRSSPLISKFLCEIEHFELSIVADFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQQDAPWIVPMRKVS
Ga0194048_1000049126	F067392	AGCAG	MSTPNRVMVGTLSTVTFDGPGRYVRPFQDKGDTWSFEWHIDCYQLAANFTPFQNNRFYSPGFVSPVEQMQAVTTTLGTAYLVHEEQPEYTACKGWLKFKRVYAGLPITRQEGTSVTHSFQYYSTSASYDWENPPPAPEVAEWPLVCPGYYLYEYFLSYWPDVIRAPKITSIFGVLLKTNWPPPTSGPFVSKDSEISIYKGSIIERKTLYVNAPTLAQLV

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