Scaffold Ga0194048_10000030

Overview

Basic Information

• Taxon OID: 3300021519
• Scaffold ID: Ga0194048_10000030
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60977
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (86.59%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.697
  • Long. (^o): -93.722

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F001538	Metagenome / Metatranscriptome	674	Y
F006110	Metagenome	381	Y
F022357	Metagenome / Metatranscriptome	214	N
F028744	Metagenome	190	Y
F030734	Metagenome / Metatranscriptome	184	Y
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F042173	Metagenome	158	Y
F045551	Metagenome	152	N
F067425	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_1000003025	F000332	GGA	MRWLILLLLLGLVGAVAKNGCHVREFYGIGYTIHNPSERHQQMSMWLTNNAQHCKASDYVVIWNNLSEWAGAADSAELRAKVVHGYKDALEREKK
Ga0194048_1000003026	F001538	GAG	MIDTIKLFPTVQPSGYPDKHDLAQKKLEKQHEMNKANELAKKQQTQLQDIGFEIYCKKTVQDRLRMEIFTNRKLDIYV
Ga0194048_1000003049	F006110	AGGA	MPRPKPPEPLIGRQVRMSDRQWMIFNQLGGAEWLRKQLEKKAPMPKKYYEVFTKSEEAAT
Ga0194048_1000003056	F045551	GAGG	MTEQRELELLRPYVAACGEMVTKNAALEKQLKAIDRLLLEVLMGDTDPMQAMINRQKIKDEYEQA
Ga0194048_1000003058	F028744	N/A	MYEFLYECDELGLDLKCFFEYEPAEVGSVEPMSGLKLEPDYPEVWTLISVFLPNSNVDLSGVLHPDVIFRIEHDAPVYFEEMRRVV
Ga0194048_1000003059	F031377	GGGGG	MITNANECISVSSANGRVTPFNTGKVQIGLLYQPKPPEMTSSEEFVQAALMGWSSIHRPVPLWPVTIGSLIVGILIILTVG
Ga0194048_1000003060	F039000	AGGA	MTKQTDDVDKDIGQIMDNAQTLLNFCATTFVKPADAWFACLVASAILTAELDVPLDKFLEGFEHAYEDALKAKKRMGASYDH
Ga0194048_1000003064	F067425	GAG	MKLSVDLLDNHVKSAVVDIGANNGYVEVFVSGGVVHLNVFNKGGDVVHDYAITTADLRKNLGKGSTTPKFEPAQEHYED
Ga0194048_1000003073	F042173	GAG	MSNPVTPFRNNLFASRGMDIQSALDYAEMMINTLSSTDQVAVRTAFGVVINTIESAVTQSQGPSPEKLAIIALIDERIDAHKLIREDAIGDVVDAHIDNLDDKISDWMSNNFDVTDYNVDDAIESWMENNLDEKVSEAIGNVEFNVTVR
Ga0194048_1000003074	F022357	GAG	MNRKTNPLINAINNATEQSRKEGHNLIARAKILDEARMKIRVNYSGVFKDLDLSVHNLFVRTSYYKPTITVNMNALESFKDTQLLGLLEFFSSKTEKVTTRDWANYLNRDYSFELDDVLVNISAYVRTDSPTCRKVQTGIKVEEIPQYELVCD
Ga0194048_100000309	F030734	AGGAG	MGRATKMADDQYQGEIQPGAQKQNMAKGGPKQTSRKTVAPSGSTTPRGVGLARNKPCKMY