NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10000009

Scaffold Ga0194048_10000009


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10000009 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99938
Total Scaffold Genes152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)133 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006979Metagenome / Metatranscriptome360Y
F012969Metagenome / Metatranscriptome275Y
F016801Metagenome / Metatranscriptome244Y
F025983Metagenome / Metatranscriptome199Y
F079981Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_10000009104F025983GAGGMATNESRSLNTSMNEGATDGKYRKVRPNTTVAPGTGEDLTLANRRGLHPYWNYDFIDQEAPSKVSPGSTTANSKPRSPMPVADISNNQMGANY
Ga0194048_10000009147F012969GAGGMRGGDISNEVPLRVAVTLDCVLSRRPTIKKVLGVPVTGEEVTYNRQALSLFWRFADKQGYALELVGFDYSQKDMDDVLSDLDNLGTNPFNYAHSYNVPADLVAELPYRPELKYVVDIPARAGRYGSWYLDMEAIANGSR
Ga0194048_1000000948F006979GGAMAKTIKVAGEGHTIKKNKKGEIIVDHAGNKGKYDKINLTKKAGAKTIKQGVKATKDWHKKNG
Ga0194048_1000000960F016801GAGGMTTLAAIQGNGWSVIGCDSRASDEDGRYMDLATHKIVNNNGVLIAVSGASRGGNIAQFGWTPPKPRATEELDVFMTKKFIPSLRKVFQDSGFEGKEDGDAAFHDSNLLVSVRGVIYPIFNDYSWDREARNVYYAGSGGDIALGALEALNFSKINTPEAAEKALRRAIEVAVKHDIYSGGEIHTYVQEA
Ga0194048_1000000996F079981GAGGMATALVALEGVLKTETGDPIPEGIKLYRILAEHYRVVITSDMSWQKTDHWLRSNLIVGYGEIYDDRYFYEGQDLRSRHLAIARAAGRVDLFIDVDADRCAEAAAMGITTLLFAHPKFIRASREIRSWDVLADEVERQRLALLEAHLGSSEKRFE
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