Scaffold Ga0194045_1001951

Overview

Basic Information

• Taxon OID: 3300021516
• Scaffold ID: Ga0194045_1001951
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6548
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.753
  • Long. (^o): -93.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F026511	Metagenome / Metatranscriptome	197	N
F086850	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194045_100195110	F006345	GAG	MNNKTAKQIVNEALNIAISKGCFGLIECSNIVKALDFLNDQPDVEFGEISQQEANEIRETKLG
Ga0194045_100195112	F086850	N/A	METRKKLKFGIAEYSKPTPRKLRRLGDGLLLASTLVTNELMVANPTIASISLIVGTIGKFLTNFFSQD
Ga0194045_10019514	F026511	N/A	MNTTTDCQTLGESSMITSDCIAIAFKRPTGSNPVNVIGYPIAEGETLTISQNVGDIDRTQYRVDFGSGAGANTCHVFRTLIQD