Scaffold Ga0194045_1001602

Overview

Basic Information

• Taxon OID: 3300021516
• Scaffold ID: Ga0194045_1001602
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7286
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.753
  • Long. (^o): -93.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019447	Metagenome	229	N
F026552	Metagenome	197	N
F036695	Metagenome	169	N
F053294	Metagenome	141	N
F076079	Metagenome	118	N
F086794	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194045_100160215	F026552	N/A	MEITNVIERLMNRDSFLNLLENDIIEKFEVSVSPFESKILVIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDSAWWHAHIIPNRILKPLVGKDYFIKIILFVVDKNGIHLFTE
Ga0194045_100160216	F076079	N/A	MKYLITESQKENIIKKYILSNFDRVDDVWFTTRENEIIINVLVNNLDDELSKKNLFDLKQNIINKANNTFNLGYYRPNGGWGFSFSQKVIEKF
Ga0194045_100160218	F086794	N/A	MKIGKLILQESEKKQIREMYGLVTEQTQSPENNQEFLDWVKNATVMPFIAPNPYSNGDLKLGVQIRSNDGKTISAMDLKNPNQSQVINLIERLDVTTEDGKHVYRFGTDTGQLFNASTFKANYEVIDNSYVVYSIVDENSNMIQTLKQFTKPGKINKFIVTVTPRLSSDLLKTGSKLFTTKPNILIVQ
Ga0194045_100160219	F036695	N/A	MEMTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVNNKGQRGDGERMLYKNNFDAYKLSETIIKKILRPLGLLKTISWGVLIVIDASGNRIIEHSMIKN
Ga0194045_10016024	F019447	N/A	MKKIPKDKLVSGLKILYKLWSREHDSDSDYPSKYYIEWDQGDPYEFYYKYEKQLGLGREAEDYYYWMNALEENEDNLESDTLTVDNVIIPKYYTFDVETYEDRVEQVHVLYEGQVEGYFKEDQLYKSFYELGMGEVFDFYDFSETDRDYRDGEGQGIELKNITMVSDVIPESNKKRKIMKESNLDSFIDSLNESETKFLIEKLQKKLL
Ga0194045_10016026	F053294	N/A	MNFFMKLMGDGSDVSSKRFSGIITLINLIGLAYVATIKSGVTPEYMYDTLALLCGSFLGLTTVEAIFAKKKNPEPKKDGE