NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194045_1001392

Scaffold Ga0194045_1001392


Overview

Basic Information
Taxon OID3300021516 Open in IMG/M
Scaffold IDGa0194045_1001392 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7847
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.753Long. (o)-93.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025232Metagenome / Metatranscriptome202Y
F028461Metagenome191N
F049572Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0194045_100139210F049572N/AMESNNQVARVNDVNTAITPEMLEASANLKQLKAAINLSPEYMELVKPGESFRGIFWGFTEITVNDQVSDEQRTIPAAAFLVDKAIRINAGVALVGECKKSGIDKGTPVEVTFKEKKGNLKIYSLTLLA
Ga0194045_10013925F025232N/AMENVNEKILEDYRLIVSRLDLMKAEVDEVNRANFKLRKAFNELLDIYQEELLRRESTEDSNHVAYYWCDKAGILD
Ga0194045_10013928F028461N/AMRKKQNAATYYKNPALQESIIRYYKEKQLNFVVKHSNYNTQIIGTEATLKFIQTEHPIRVFVAYNKIVKDLKESPKTVEILQGEWSTENFDSRNGLKPAFYKKILNLDISSAYPYCLWINKLITQDTFNYLMAMPKTERLPAIGMIAKKSVWITYTAGKADSWELKEGFYANIFFYVIQQITDLMAWAAEIAGDSFLFFWVDGLFVKNSIPKKKLDEITRIFSEQGYYFKYEKVENCNIVRDGDKLLINMIKNGQEKPYQMYDKNLARNFTKVLQALENAEQDPVFLS
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