Scaffold Ga0194045_1000722

Overview

Basic Information

• Taxon OID: 3300021516
• Scaffold ID: Ga0194045_1000722
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10865
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.753
  • Long. (^o): -93.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F013755	Metagenome / Metatranscriptome	268	Y
F054609	Metagenome / Metatranscriptome	139	N
F105027	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194045_100072214	F001259	AGGAGG	MRSNYAFIYVHAFNGTIRVECLDTARNIDGNPEWKHVSTVNPHVILEQILRATIKDRNLIIKHLLA
Ga0194045_100072215	F013755	AGGAGG	VSDTPISDSTPHNVAELGILCRRLERFAAVRLAYITQLEVENDALRADLLLWNEKEVK
Ga0194045_100072217	F054609	N/A	MNSLISNAVARGWISFPHPAAVTSRMNSPAYNAQRAWKLWNEGQSLEYVAKAIGVKKRCVMAIIEEGKSKAKEVK
Ga0194045_10007229	F105027	GGAGG	VSDIVHRKVTIVIEDAEGGFTLSMDCVPPIEGDGSQVRPTPALMAGSVARRAIEELVNRQTPEVPTEAPGAPPEAAN