Scaffold Ga0194045_1000068

Overview

Basic Information

• Taxon OID: 3300021516
• Scaffold ID: Ga0194045_1000068
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L626-11m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28180
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (26.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.753
  • Long. (^o): -93.798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F037116	Metagenome / Metatranscriptome	168	N
F042808	Metagenome / Metatranscriptome	157	N
F063494	Metagenome / Metatranscriptome	129	N
F078232	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194045_100006812	F001272	N/A	MIKIELTQEQANSLLQLIDIAIKAGGYQNAKVGVPLADIILAAAQPKSE
Ga0194045_100006813	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAVSFIPVLTDWVRLITALIGLACAIYAAYRLFRSK
Ga0194045_100006823	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTKLLTFNDPTVVYNNGYYNAAVQSAFKEGFFQGCGAYINDNGDPYIYASIGGKNFQIDIGNNFLVTDQTPQISTFSVNTRGRVSNVATYVCGAPHNLFPGMVVRLPEPVGALFTEGFFGDFVVQTIPSPTTFTTYSPGVDAGPLLGPNFTGYLLAANNPNAAHVYFQQAENWLIIQDGLNAPYLYDGTSFRRAASDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPAFGRNSVIRFTENTFINEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLSYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVTRAIAYDTEFYLTAASSVNFDNRMLMTIQPQKINGRGIVHRGLVVLDFDLVSGMGRKLPPAWEGVWTGVDVFQMLTIRIQKQDRCFMFGLNQGDIGLFEVTKNGQFDFDGYDDVPIDWTIETRSLTFAEPSNKKRLVSAEQWYDQVMGNIEAKVYFKANEGECWQPWAEIKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSE
Ga0194045_100006826	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDERFVQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNLCGYNIPIQNQWYEFQTDTRAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLSADAGKRVLLQGLDPNGIPIRTLDSVTGEYVWGEYVTLPNPSITAYVRTSNRFKQPGLTGAQKPLTQGSLTIIAENDTTGLLTQVAVWGPSEQNPEYRRTYLVGMPEVCGGANSCSTTQDNCCIDNGDGCVPADETCTNTVVEAIVRLDFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQYRFGGFI
Ga0194045_10000683	F063494	N/A	MSNPTIRAAAITQALHGQKAPEHLSPEGKYRFYERLGMLCGTAQATESQIRIALLDATEYDLNCDSEP
Ga0194045_10000687	F028149	AGGAG	MASGNVISCKQFQSFLVSQEPVYDKEILKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRNTYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYDALSNTQPGAFAVVPGLPAIAFSWVGTGYSVLRVTDTAAAPIAFATVGMLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKDTFRYLSKENPLLVSSWRFGEFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFVSTATAGNYRLVLPYRNVTATQGIRSEFNPDYNAAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHRVSQVCPIFIGGCGADPGELAQNYNSADPVCPRVIQFTATTVTGGTNFVLNANASILCNDNYITSPAINAANVAALVVAIQAAWTAEFGAGSGTWSVVSGNLIQISGTTCDNVTLEFSI
Ga0194045_10000689	F078232	AGGAGG	MPVLTPQQLGDTGVCFDCMEPGLQQTMLLSLLQQIQVASFDAARTTASPGGLLTATATAAANPGRRRFVIQNQKTTEHLHVKFGTGCTTTDYHYVLLSAATAGAGATSLTFEGYTGAISVAPVAGSPSYTFAEFV