Scaffold Ga0190315_1015422

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190315_1015422

Scaffold Ga0190315_1015422

Overview

Basic Information
Taxon OID	3300021513 Open in IMG/M
Scaffold ID	Ga0190315_1015422 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2225
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0118	Long. (^o)	-110.5962	Alt. (m)		Depth (m)	2005
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190315_10154225	F016098	AGGTGG	MSEERRYVYMRKTRSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPNRQIPNEDNARNLVYTWCDRCQSLRYFRKVGIVTWKCETCGIERTNSELMENIRNILEAD

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