Scaffold Ga0190315_1014200

Overview

Basic Information

• Taxon OID: 3300021513
• Scaffold ID: Ga0190315_1014200
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2341
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0118
  • Long. (^o): -110.5962
  • Depth (m): 2005

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067298	Metagenome	125	Y
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190315_10142002	F067298	GGAGG	MRVITEEDAEKIIRALNLKRRIGELEKQIGELQRRKAKMEQEYENLGIKIE
Ga0190315_10142005	F091133	GAG	MGIFDVWSSWTDWLSDWWDAFKDKIWDIKTELWSWVDDIAKYWVGRANEFFDILNHAWSEVEDLMEEAKSYADDIVTDAILKIDDWVTTFGETVADLWEKIEPYFEPIITPIENAIDTIQNVKIPSLEDIINVLNESVNNILNWDIPFLNQSVTDLWNEANNIWTEIWDNIWISLNNAWDDINNIWNTFAEIPADIWNGITEGWEGFTDFLFEQGERLIEKILDIDIPIDDIIEELERRFKGGEK