NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190315_1001221

Scaffold Ga0190315_1001221


Overview

Basic Information
Taxon OID3300021513 Open in IMG/M
Scaffold IDGa0190315_1001221 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-0-1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10704
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F016235Metagenome248Y
F024941Metagenome203N
F028993Metagenome189N
F067298Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0190315_100122115F067298GGAGGMVMVIKEEDAGKIIRALNLKRRIRQLEKQIAGLRREKAKIEEEYAKLGINIE
Ga0190315_100122116F009582AGAAGGMPAKRRRREFVGGTGRAVKEARVDVVLQRVNEKIGSELDVSPSHIYRYGVNNIFQRTFAYLLGWKTNGEPQKIAVTEGGLVKVGIAGAGFEDISVLKGTATVIWSDVLEFSFVPNRIRFESLDYPYCAMFSKDNITWSEAIYVDEDTPRDYDICAKYVKVKRYGGTDARYWIVGMR
Ga0190315_100122119F028993AGGMADIVERAVRKRSERIAVSEAYYKEGVESPSKDWLEQFKKAKDRRNAGLRRAMEEGLFEIGAERVGTEGWKSATLAKADRWLTGATSEVANRRYEERMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEEKKRRR
Ga0190315_10012212F024941AGGAGGMAYAFWGRLGLTKGEQYRQLLEKAWNLGWSQRRFFREARERGLGYAEKLMREDWHRFGYVESARTYEGKLTQHIFFDEVVRKLHDKEGWSWKEIKEFLNERKDPRRWTPETKVKEKIYKSYLREALPEKADT
Ga0190315_10012213F016235AGGAGGMSEEKIPSSPPLFSHKRWSHRRGYQKCVKFVGIDRNYETFGKGFPLCVAIEFKNPVFRYTPRTYEMARLLASFLILYGEEYMDELFALTLIEYNKMRRRRVWLTHFGDGSD
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