Scaffold Ga0190303

Basic Information
Taxon OID	3300021512 Open in IMG/M
Scaffold ID	Ga0190303_1001232 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-0-1_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021512 Open in IMG/M

Scaffold ID

Ga0190303_1001232 Open in IMG/M

Source Dataset Name

Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-0-1_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10351
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10351

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5931	Alt. (m)	Depth (m)	1999
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5931

Alt. (m)

Depth (m)

1999

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190303_10012321	F028993	GAG	MADIVEKAVKKRSERIAVSEAYYKEGVESPSKDWLEQFKKAKDRRNAGLRRAMEEGLFEIGAERVGTEGWKEATLAKADRWLTGATSDVANRRYEERMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEAKKRGR
Ga0190303_100123214	F016098	AGGAGG	MSEERRYVYMRRTQSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRQIPNEESDRDYVYTWCEKCGGLRFFRKISEDKWKCQTCGMEKTVRELINKLRSIMETE
Ga0190303_100123217	F040961	GAG	MVKAAECRWSEEQAKGLLTFLIAEKKRHEKDIHNIERSIQRIKREFGFTDADIAKCEELAWLYVEF
Ga0190303_100123218	F016235	AGGAGG	MDKSKISSSPPLFSHKKGRHRYGYQRCVAFVGIDKNNDYFGEGFPLCAVVKFKQPIYRYTPRTYELARLLATLKILYGKKYMEELLAWTELEYVRMRRRAEWLTHFGGGSD
Ga0190303_100123219	F024941	AGGAGG	MAYTFWGRLGLTKGEEYRKLLEKAWNLGWSQRQFFREARARGLGYAEKLMREDWHRFGFVESARTYEGKLTQHVFFDEVVRKLHDKEGWSWKEIKEFLNERKNPRRWTPETKVKEKIYKSYLREALPEKADT
Ga0190303_10012323	F011723	GGAG	MIYNKGLSRENSTNEGTKIFSLISKPEEKVKVRRIVITDVVSNPLIMELWIERDRIGEAIPLEVIADATPERIIDVDAVVEAGYEFSIVIKPQTSGNQGSVRGWVEYEIVG
Ga0190303_10012325	F009582	AGGGGG	MLRRKGRRPFVSGTGRAVKEARVDVILQRVNEKIGSELDVSPSHIYRYGVNNIFQRAFAYLLGWKTNGEPQKIAVTESGLVKVGISGAGFEEIDVLKGTATADWSDTLEFLWVPNRIRFEAVDYPYIAKFSKDGVTWSEEVYVDGETPRDFDICARYVKVRRYGGTDATYWIIGMR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190303_1001232

Overview

Ecosystem & Geography

Associated Families

Sequences