Scaffold Ga0190304

Basic Information
Taxon OID	3300021509 Open in IMG/M
Scaffold ID	Ga0190304_1001382 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021509 Open in IMG/M

Scaffold ID

Ga0190304_1001382 Open in IMG/M

Source Dataset Name

Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-1--2_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10770
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (90.91%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10770

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (90.91%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5931	Alt. (m)	Depth (m)	1999
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5931

Alt. (m)

Depth (m)

1999

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N
F067298	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190304_100138215	F016098	AGGAGG	MSEERKYVYMRKTRSGNGVRMRDGEIVYIASIRSLEQFLQGEQEYVAFARMPYRQIPNENNERNVIYTWCDKCGGLRFFRKISEDKWRCEMCGTERTARELIEKVRAILEAD
Ga0190304_100138217	F024940	AGGTGG	MEREIIHKKIRSIKELREFITDYLIEHSEMRSKAMLAGNTFVIAYEQGFLDALKTVRDLLSKEGLLMYRYVINGEEERAEDKNRDTF
Ga0190304_10013822	F028993	AGG	MGKIVEKASKKRKERIAVSEAYYKEGVEAPSKDWLEQFKKAKDRRNAGLRRAMDEGLFEKGAERVGTEGWQRATLAKADRWLTGATSEEANEKYASAMADVEECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEAKKRGR
Ga0190304_100138220	F024941	AGGAGG	MAYYFWGRLGITKGEEYRKLLERAWNLGWSQRRFFREARARRLGYAEALMREDWHRFGYVESARTYSGKLRAHIFFDEVVKKLREEEKWTWSEIREFLKERKQPSKWTPETKAKEIVFEKYAGNAFPELYP
Ga0190304_10013824	F011723	GGAG	MIYNKGLSRDDSTDEGKEIFSLTSKEEEKYKVRRIVITDVEDNPLIMEIWVERDRIGENIPLEVASDIAPERVIDIDAEIPVGHTFSVKIKPQSSGSQGSVRGWVEYEIVG
Ga0190304_10013825	F009582	GGTGG	MSVRRGRRKFVGGTGREVKEARVDVVLQRLEENIGNEINVYPKHVYRYGVNNIFQRTFAYLLGWKTNGEAQKIAVTNAGLVKVAISGAGFEEIDTLRGTATVNWSSTLQFAWTPNRIRFEALDYPYLAKFSLDGVTWTDEVYVDSDMPRDFDINAKYIKVRRYGGTDAKYFIMGMR
Ga0190304_10013826	F067298	GAG	MAVVIKEEDAGKIIRAFNLKRRIKELEKEIGDLQRKKAKLEAEYQDLGVEIE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190304_1001382

Overview

Ecosystem & Geography

Associated Families

Sequences