NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190316_1021746

Scaffold Ga0190316_1021746


Overview

Basic Information
Taxon OID3300021507 Open in IMG/M
Scaffold IDGa0190316_1021746 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1779
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0118Long. (o)-110.5962Alt. (m)Depth (m)2005
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098395Metagenome103Y
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0190316_10217463F098395AGAAGMKIEVITPLDLEDFAKRIESLEEDSKLHDSLLHDVFENIDQMQRCLSGLEDRIKHLESNRESSSEE
Ga0190316_10217464F100149N/AMYWSKEEEEILKSLWKKPDITAKIIKERHLPHRTINAIQKKASSLGLTKEKIKIDCEKINEIII

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