Scaffold Ga0190316_1006708

Overview

Basic Information

• Taxon OID: 3300021507
• Scaffold ID: Ga0190316_1006708
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-11-1-2_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3506
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0118
  • Long. (^o): -110.5962
  • Depth (m): 2005

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033663	Metagenome	176	Y
F048033	Metagenome	148	N
F057026	Metagenome	136	Y
F096388	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190316_10067083	F096388	GGAGG	MIKIPILDNRENRNWFHQFEHPAYTMLGGNNKSVERKLKQDMKQLKWREWWRNPRKKIDLLSGTEDGCRWRVRLLVNSFGDVSVVFDFT
Ga0190316_10067085	F048033	AGGAGG	MIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEKLTENMQKLIKNFRNAGKTIEYMDKDRYDAYKGEVQFHTENFEEE
Ga0190316_10067088	F033663	AGGA	MLLKGDWEIMEQESSDENVTQVYGIRCKVEDEEIREWDYDSLTNITFLYKQRCALFEDIWEDGMAVPEFFFEIKRDMLMLRDLVLGKFNILLVVEEEN
Ga0190316_10067089	F057026	AGGAGG	MGRDEQIQVLEEIVCLFEKAMEGLKSAYGSTEDENQKLKLKGGILVFEFVINLMKQKMELLGNEE