Scaffold Ga0190358_1059939

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190358_1059939

Scaffold Ga0190358_1059939

Overview

Basic Information
Taxon OID	3300021506 Open in IMG/M
Scaffold ID	Ga0190358_1059939 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-1-2_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	752
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)		Depth (m)	2011
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038691	Metagenome / Metatranscriptome	165	Y
F066809	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190358_10599392	F038691	N/A	MGFHKRHITNEQVIRLYEDGGVARIREWYTHKVDALITETGLASKVGSVISDDDWVQFGTVKQDTEITKLIQQYLGVEDIRK
Ga0190358_10599393	F066809	N/A	MLYSNLKEQQPVTREKDWDGIIKLRGTSITIFWTMITSMKGKGFFAARDFVEMMAAFGADLSKVVGKVHEDNQALRDNHAKMAELDQEVNHPDVILDVPIDEYNKAEEELNNLMDEVDPVVETV

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