Scaffold Ga0190307_1000552

Overview

Basic Information

• Taxon OID: 3300021502
• Scaffold ID: Ga0190307_1000552
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-4-5_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10638
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5931
  • Depth (m): 1999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F028993	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190307_100055218	F028993	GGTGG	VEKAVKKRSERIAVSEAYYKEGVASPSKDWLEEFKKAKDRRNAGLRKAMEEGRFEQGAERVGTQGWQSATLNKADRWLTGATSEEANEKYAERMRDVAECIERAKKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEEKRKRR
Ga0190307_10005523	F016235	AGGGGG	MSEEKISSSPPLFLHKRWSHRRGYQKCVKYIGIDRNDETFGRGFPLCAVIKFRIPIYRYTPRTSEIAKLLATLRILYGEEYMEELFALAEVEYLKMRRERKWHIHFGENSD
Ga0190307_10005525	F024940	AGG	MKREIIYKKIRKANELREFITDALIEHAERRASALIQQNINLFYYEQGFLDALKTVRDLLSKEGLLMYRYVYEEKREREEDEHRDTF
Ga0190307_10005527	F016098	AGGAGG	MSEERRYVYMRRTQSGNGVRMRDGEIVYVASIRSLEAFLHGEREFVAFMRFPYRQIPNENAERNILYTYCDKCGAGRFFRKVGEDKWKCETCGTERTTTELIEKMRSILETD