Scaffold Ga0190309_1001748

Overview

Basic Information

• Taxon OID: 3300021498
• Scaffold ID: Ga0190309_1001748
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5505
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5931
  • Depth (m): 1999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190309_100174810	F035145	AGGAG	MLEASSEFTRRGYNLKTVTTEDEFGLMKVQVICLTANTTFPLLTLSYNKCTKHFVLAIERRFVTQKSTLQALTEALEKVKEVMKNGEMEQIER
Ga0190309_100174811	F049343	AGGAGG	MVRWSRLRDKLRKGEWYAVSVVCFIAGIVAGKGITVLGRAEPVLMLTGVGAVLLAYWVALLIATIAASVKEEA
Ga0190309_10017483	F029954	AGGTGG	MELRVKEYKFNNGERKVEYVIPPTNTPFFSVVFSKEGGVRMIAIHQRVFEYHEAVVLMSLLCGVIRNEGESTKS
Ga0190309_10017489	F050065	GAG	VSGEVEKILLAITYLESLLRDAKRRGNEELVKYVGGVIRIYKERLQSQNSNN