Scaffold Ga0190309

Basic Information
Taxon OID	3300021498 Open in IMG/M
Scaffold ID	Ga0190309_1000759 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021498 Open in IMG/M

Scaffold ID

Ga0190309_1000759 Open in IMG/M

Source Dataset Name

Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8808
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (94.74%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8808

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (94.74%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5931	Alt. (m)	Depth (m)	1999
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5931

Alt. (m)

Depth (m)

1999

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016235	Metagenome	248	Y
F024941	Metagenome	203	N
F040961	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190309_100075916	F040961	AGGAGG	MVNAVECRWSEEQAKALITFLIAEKKRHERDIHHIERSIERIKREFSLTDADIAKCEELAWLYVEW
Ga0190309_100075917	F016235	GGAGG	MSNKNIPSSPPLFKHKRWKHRHGYQRCVEYVGIDKNDNYFGGGFPLCAVIKFRRSIYRYCPRTYELARLLATLKLLYGDEYMEELFAWMELEYVRMRREKKWLTISGND
Ga0190309_100075918	F024941	AGGAGG	MAYYFWERLGITKGEQYRQLLERAFKLGWSQRKTFTEARRLGLGYAEALMREDWHRFSYVESARTYTGKLRVHDFFDGVVAKLHYEKKWSWKEIREFLKERKEPAKWTPETKAKEKVFREYAKKVFPELYPD
Ga0190309_10007593	F011723	GGAG	MIYNKGLSRENSTNEGKKIFSLISKPEEKVKVRRIVITDVLSNPLIMEIWVERDRIGEAIPLEVISDATPERIIDVDAEIPEGYEFSVVIKPQTSGNQGSVRGWVEYEIVG
Ga0190309_10007594	F009582	GAG	MSARRGRREFVGGTGREVKEARVDVVVQRVEEKIGRELNVVPSHVYRYGVNNIFQRTFAYLLGWKSDGEPVKLQASYGGLLKVAISGAGFEEVDVLEGTAGALWSGILEFNFVPNRIHFESLDYPYVVMLSRDKVKWTEMIYVDEGTPRDFDICAKYIKVRRYGGSNAHYWIVALR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190309_1000759

Overview

Ecosystem & Geography

Associated Families

Sequences