Scaffold Ga0190309

Basic Information
Taxon OID	3300021498 Open in IMG/M
Scaffold ID	Ga0190309_1000743 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021498 Open in IMG/M

Scaffold ID

Ga0190309_1000743 Open in IMG/M

Source Dataset Name

Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8885
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8885

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5931	Alt. (m)	Depth (m)	1999
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5931

Alt. (m)

Depth (m)

1999

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F024453	Metagenome	205	Y
F040421	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190309_100074310	F014691	AGGAGG	MSRGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR
Ga0190309_100074311	F040421	GAG	MREEGVRAITMLMLAFTIGFKSIILFLQHSFGFAFALFLLAWTCICLAFPDQLIGASIGQDLKLKGVIEK
Ga0190309_100074312	F019588	AGGGGG	MSGEKRIEEEVKEILERLRVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEILDRKMGIPVKDLLK
Ga0190309_10007432	F024453	AGGAGG	VKMEIPERDAVVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVMERGESGREEGIQKDVEKVRSVHELAQVRRANAKQ
Ga0190309_10007433	F015290	AGGAGG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVIPTVADATSWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV
Ga0190309_10007434	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKKHKYTYYQQGGEEEKW
Ga0190309_10007437	F017081	GGAG	MEERGRKWWWKGICILGILTFLIATAQAIDITEITATETQIKVTIANASSSGYIFVSPSNKSFPYAYSHQGNGTYIITATFLKVNTTYYVKACDNENCSNVVSVNVSKEEKLVEQNFTAPFNNLMQGGNFLNISKLGETIPSVYTSLLTDMFWAMLFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190309_1000743

Overview

Ecosystem & Geography

Associated Families

Sequences