Scaffold Ga0190309_1000687

Overview

Basic Information

• Taxon OID: 3300021498
• Scaffold ID: Ga0190309_1000687
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9288
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5931
  • Depth (m): 1999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F015290	Metagenome	255	N
F024453	Metagenome	205	Y
F056226	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190309_100068710	F024453	AGGAGG	VKVEIPDRDAAVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSICSEEISEVGEEVKSVREDGRERDMEKVRSVHELAQVRRANAKQQGTSR
Ga0190309_10006876	F056226	AGGAGG	MRAYDILLFLVCLEASIGFVASIDLFSTTYVEPSAVQLTNWNVQEIQNQSSELSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0190309_10006878	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTSIVGIDETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0190309_10006879	F015290	AGGAGG	MLNNKGQAGEIAVFAILVFMVAFAYIFISPIVQNIKDVVPIVADATSWTNAQAQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV