Scaffold Ga0190309

Basic Information
Taxon OID	3300021498 Open in IMG/M
Scaffold ID	Ga0190309_1000584 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021498 Open in IMG/M

Scaffold ID

Ga0190309_1000584 Open in IMG/M

Source Dataset Name

Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10257
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (94.44%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10257

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (94.44%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5931	Alt. (m)	Depth (m)	1999
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5931

Alt. (m)

Depth (m)

1999

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016235	Metagenome	248	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190309_100058415	F009582	N/A	MVERRGRRPFVGGTGREVKEAKVDVVLQRVEEKIGRELNVVPSHVYRYGVNNIFQRTFAYLLGWKTDGEPQKVAVTEGGLLKVGISGAGFEEIDVLKGTATVNWSDTLEFAWIPNRIRFEAIDYPYIAKFSRDNVTWSEEVYVDGETPRDFDICAKYVKVRRYGGSDATYWIIGMR
Ga0190309_100058416	F011723	GGAG	MIYNKGLSGENSTNEGKKIFSLISKPEEKVKVRRIVITDVLSNPLIMEIWVERDRIGEAIPLEVISDATPERIIDVDAEIPEGYEFSIVIKPQTSGNQGSVRGWVEYEIVR
Ga0190309_100058418	F028993	AGGTGG	MADIVEKAVKKRSERIAVSEAYYREGVEHPTKDWLEEFKKAKDRRNAGLRRAMDEGLFEIGAERVGTDGWQRATLAKADRWLSGATSAEANEKYEEAMRDVAECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEEKRKRR
Ga0190309_10005842	F024941	AGGAGG	MAYYFWERLGITKGEQYRQLLERAFKLGWSQRRTFTEARRLGLGYTEALMREDWHRFSYVESARTYTGKLRVHDFFDGVVAKLHYEKKWSWKEIREFLKERKEPAKWTPETKAKEKVFREYAKKVFPELYPD
Ga0190309_10005843	F016235	AGGAGG	MSEKQIPSSPPLFKHKRWKHRHGYQRCVEYVGIDKNDDYFGRGFPLCAVIKFRRNIYRYCPRTYELARLLATLKLLYGEEYMEELFAWMELKYVRMRREKKWLTISGND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190309_1000584

Overview

Ecosystem & Geography

Associated Families

Sequences