Scaffold Ga0190309_1000357

Overview

Basic Information

• Taxon OID: 3300021498
• Scaffold ID: Ga0190309_1000357
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12901
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5931
  • Depth (m): 1999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F024453	Metagenome	205	Y
F040421	Metagenome	161	Y
F046123	Metagenome	151	Y
F056226	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190309_100035710	F040421	GAGG	MREESVRAITMLTLAFIIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLREVIGRWMKRRELKGK
Ga0190309_100035711	F019588	GGAGG	MDEEKRIEGEVREVLERLRVPYSVEIVIVDDGSGKVVFRWRRGRGNLVRGMQKTIEVLDRKIGIPIKDLLK
Ga0190309_100035718	F019935	AGG	MPKVKETANRIVVHVGDLWRRYHRASPKTKRRWKFRIKDVGRLKHSELILCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG
Ga0190309_10003572	F024453	AGGAGG	VKMEIPERDGIVMYFAILQNLAQRLDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGGEGDMEKVRSVHELAQVRRANAK
Ga0190309_100035720	F046123	AGG	MPCPYKEGSEMCWLCWYWIEAEERCIFDEDDPEREFLLIDEFKDIDPKTYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLVVMSHK
Ga0190309_10003573	F015290	AGGAGG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTIADITSWTNAQTQTMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0190309_10003574	F007460	AGGTGG	MDDEEGMGMGTAIFVVMMNIVFAIIFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFMMFVWLFKYIVRRHKYTYYQQGGGEEEW
Ga0190309_10003576	F056226	AGGAGG	MRAYDILLFLVCLEASIGFVASIDLFSTTYIDPSAVQLTDWNVQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0190309_10003577	F017081	GGAG	MRKRGRKWWWKGVCILGILTFLIATAQAIDITEIIATETQIKVTIANATSGGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSDVMTVSVSKEGKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMIGGIAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0190309_10003579	F014691	AGGAGG	MRGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYLALVVILAMAIGVFLSLVRVK