Scaffold Ga0190309

Basic Information
Taxon OID	3300021498 Open in IMG/M
Scaffold ID	Ga0190309_1000341 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021498 Open in IMG/M

Scaffold ID

Ga0190309_1000341 Open in IMG/M

Source Dataset Name

Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13341
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (96.55%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13341

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (96.55%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5931	Alt. (m)	Depth (m)	1999
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5931

Alt. (m)

Depth (m)

1999

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023017	Metagenome	211	Y
F029623	Metagenome	187	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F042112	Metagenome	158	N
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F066330	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190309_100034110	F023017	AGGAGG	MRLKKERREEMKVKIIEFLKNADGHIASIPMLARAIHASSPTAKSIVFELEVERKVSVVMLGGQYMVKLEELEEEV
Ga0190309_100034113	F029623	GAG	MNTYAKYVRARFERGNLIVEVSKDAFKDAEAKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALIIVLLK
Ga0190309_100034116	F049343	AGGAGG	MEWSRLRDKLRKGEWYAFSAVCFLAGVVAGKGITVLGRAEPVFALTAVGAVLLAYWLALLTATIIAEIKEAPKTI
Ga0190309_100034118	F035145	GGTGG	LERLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFVLTIERKFITQQSTLKALIEALENVREVIKGNASS
Ga0190309_100034119	F050065	GAG	LSSQYQMRKNGVINVLKATASMEQIMLAITYLKGLLRDAKRRGDRELVEYVGEIIGIYEARLQPKNNNN
Ga0190309_100034122	F029954	GAGG	MELRTKEYKFNDGGRKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKKVIKNEERIQ
Ga0190309_100034129	F066330	AGGTGG	MAEEEKRKVVVSVALSVDEYLRLEEAVMRKHGRKWGVFSEFVREAIRKAVEEVLQQKGH
Ga0190309_10003415	F042112	GGA	MTFDEYSSAFPLYEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGLML

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190309_1000341

Overview

Ecosystem & Geography

Associated Families

Sequences