NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000341

Scaffold Ga0190309_1000341


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000341 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13341
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (96.55%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F029623Metagenome187Y
F029954Metagenome186N
F035145Metagenome172Y
F042112Metagenome158N
F049343Metagenome146Y
F050065Metagenome145Y
F066330Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100034110F023017AGGAGGMRLKKERREEMKVKIIEFLKNADGHIASIPMLARAIHASSPTAKSIVFELEVERKVSVVMLGGQYMVKLEELEEEV
Ga0190309_100034113F029623GAGMNTYAKYVRARFERGNLIVEVSKDAFKDAEAKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALIIVLLK
Ga0190309_100034116F049343AGGAGGMEWSRLRDKLRKGEWYAFSAVCFLAGVVAGKGITVLGRAEPVFALTAVGAVLLAYWLALLTATIIAEIKEAPKTI
Ga0190309_100034118F035145GGTGGLERLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFVLTIERKFITQQSTLKALIEALENVREVIKGNASS
Ga0190309_100034119F050065GAGLSSQYQMRKNGVINVLKATASMEQIMLAITYLKGLLRDAKRRGDRELVEYVGEIIGIYEARLQPKNNNN
Ga0190309_100034122F029954GAGGMELRTKEYKFNDGGRKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKKVIKNEERIQ
Ga0190309_100034129F066330AGGTGGMAEEEKRKVVVSVALSVDEYLRLEEAVMRKHGRKWGVFSEFVREAIRKAVEEVLQQKGH
Ga0190309_10003415F042112GGAMTFDEYSSAFPLYEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGLML

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