Scaffold Ga0190309_1000267

Overview

Basic Information

• Taxon OID: 3300021498
• Scaffold ID: Ga0190309_1000267
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15341
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5931
  • Depth (m): 1999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F042112	Metagenome	158	N
F046123	Metagenome	151	Y
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F066330	Metagenome	126	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190309_100026711	F046123	AGAAGG	MGAIKMSCPYKEGSEYCWLCWNWMESAEYCLYDEDDPQREFVLIDEFKDIDPQTYKERMEWIKGLGLMSLYRAFKARRSEKQRSLSDFGVVVMSHE
Ga0190309_100026713	F066330	N/A	VGERMAEGKKRKEGREVVVSVALPIEEYLRLEEAVMRKHGRKRGVFSEFVREAIKKAVEEVLQAGGEE
Ga0190309_100026719	F029954	GAGG	MELRTKEYRFNNGERKVEYVIPPTNTPFLSILFNKEGAVEMITVHQRVFEIHEAVMLMSLLCGVIKNEKRMRNS
Ga0190309_100026721	F050065	AGGAGG	MNMLKATASIEQIMLAITYLKGLLRDAKRRGDKELVKYVGEIISVYEARLQSQNSNN
Ga0190309_100026722	F035145	AGGAG	MLEKSSAFMRRDYNLKTVITEECCDLMRVEVICFTAKTSFPLLSLTYNKLTDNFVLTIERKFITQHSTLKALIEALRSVEEVVRNDERRTERGDM
Ga0190309_100026724	F049343	AGGGGG	MEWSRLRDKLKRGEWYAFSAVCFIAGVVAGKGITTLGRAEPVFVLTGVGAVLLAYWLALLTATIIAEIKERRKEAPKTI
Ga0190309_100026729	F023017	GAGG	MKFKRERREQMKQKILEFLKNADGHIASIPMLARAIQASPPTARSIVFELEVERKVSVVMLGGQYMVRLEEEV
Ga0190309_100026734	F042112	GGA	MTFDEYSSAFPQFEEKYVSKLAYPHLLFIQIQKIMDSIDAGGDGMEELENLKALLKSSWRAEIDMKTEECRKRMEKEIKRIAKVKERVGITTYREMKRAAKVRYVREYVQHVIEKLDEVGLLLIEEQTVLRGGGLMP
Ga0190309_10002675	F072934	AGGAGG	MVEIDIDALLADEEMRKKLNEWNRETAKRRLESMKNLSEPHRRYLEKIASGEWKIW
Ga0190309_10002678	F019935	N/A	MPKIKETTNRVVVHVGDLWRRYHRASPKTKKKWIFRIKDVGRTKHSELILCKPPNGEWQTYAWSFSKRQVKKGKRKLIVYDAKAYEILQKLKEAGELRGWKLIKR