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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021498 Open in IMG/M |
| Scaffold ID | Ga0190309_1000150 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22112 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (86.49%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 13 (100.00%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5931 | Alt. (m) | Depth (m) | 1999 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007460 | Metagenome | 350 | N |
| F014691 | Metagenome | 260 | N |
| F015290 | Metagenome | 255 | N |
| F019588 | Metagenome | 228 | N |
| F019935 | Metagenome | 226 | Y |
| F023017 | Metagenome | 211 | Y |
| F029954 | Metagenome | 186 | N |
| F040421 | Metagenome | 161 | Y |
| F042112 | Metagenome | 158 | N |
| F046123 | Metagenome | 151 | Y |
| F055335 | Metagenome | 138 | N |
| F066330 | Metagenome | 126 | N |
| F072934 | Metagenome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190309_100015011 | F015290 | AGGAG | MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVIPTVADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV |
| Ga0190309_100015012 | F007460 | AGGTGG | MDDEEGIGIGTAIFVVMLNIVFAIIFFFLIGSVMCGILPPLTSIVGVDETTPFAQALTLVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQYQEEEM |
| Ga0190309_100015014 | F055335 | AGGAGG | MRAYDILLFLVCLEATIGFISSLHVFPVDYVDASAVQTPADWNLQEVENQTATQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME |
| Ga0190309_100015019 | F014691 | AGGAGG | MRKGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYIALVVILAMAIGVFLSLVRVK |
| Ga0190309_10001502 | F023017 | AGGGGG | VRLKKEKREEMKQKILEFLKNAEGHIASIPMLARAIHASSPTAKSIVFELEVERKVSVVMLGGQYMVKLEELGEGV |
| Ga0190309_100015020 | F040421 | GAGG | MREESVRAITMLTLAFVIGFKSIILFLQHSFGFALTLFLLAWTCICFAFPDNLIGASIGQDLKLGEVIEKWVRRRELKRK |
| Ga0190309_100015021 | F019588 | GGAGG | MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVRGMQKTIEVLDRKIGIPVKDLLK |
| Ga0190309_100015026 | F072934 | GAGG | MAEMDIDKLLADEEIREKMNEWNREKAKRRLESMKNLSEPYRRYLEKIASGEWKVW |
| Ga0190309_100015028 | F019935 | AGG | MPKVKETANRTVVHVGDLWRRYHRASPKTKRRWKFRIKDVGRLKHSELILCKPPNGDWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG |
| Ga0190309_100015031 | F046123 | GGAGG | MPCPYKEGSEMCWLCWNWIEAEEKCIFDEDDPEREFLLIDEFKDIDPKIYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLAVISHE |
| Ga0190309_100015033 | F066330 | AGGAG | MAEEEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIRKAVEEVLQQK |
| Ga0190309_100015035 | F029954 | AGG | MELRTKEYKFNDGERKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEGDNGYRNGSSTLYH |
| Ga0190309_10001506 | F042112 | AGG | LRKREVRETEVKRKKMSYDDFSPSFLQEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVRERVGITTYREMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGVML |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |