Scaffold Ga0190352

Basic Information
Taxon OID	3300021495 Open in IMG/M
Scaffold ID	Ga0190352_1000349 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021495 Open in IMG/M

Scaffold ID

Ga0190352_1000349 Open in IMG/M

Source Dataset Name

Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11381
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (51.85%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11381

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (51.85%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	Depth (m)	2011
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5956

Alt. (m)

Depth (m)

2011

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038026	Metagenome	166	Y
F056227	Metagenome	137	N
F057027	Metagenome	136	N
F069552	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190352_100034910	F069552	GGAG	MKKNSIAWFVVECTKSITIQLRCFKCRFMFPDVPRQLVKNFQSLGKGMYSLVFALKNIDCKKEYFLNNIIEADVNSTGFGKANVEVETTIPNDEEYQKLRKLIDDWYKQKVDTFPFFLGIVMYNSYREWRKMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSTPPKFLGTTTSWD
Ga0190352_100034913	F038026	GAGG	MLKFMVYKNEDEYVLIIEYEDRAERLLASSLKDLVQVMADTTLYNFEGKSKYFEQSHHAKVEIM
Ga0190352_100034919	F056227	N/A	MEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHSLEYLYVKYPQENREEVKVPSTDYRDVNIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190352_100034927	F057027	N/A	EVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMEGSVFTITSTGNYNYEVVYRKPAKEPEIVDESKIEEIVKKVMSGGNKSKEEICLWVKEYLKVEGVQVSDVVINSVVDRVVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190352_1000349

Overview

Ecosystem & Geography

Associated Families

Sequences