Scaffold Ga0190352_1000147

Overview

Basic Information

• Taxon OID: 3300021495
• Scaffold ID: Ga0190352_1000147
• Source Dataset Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17557
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055334	Metagenome	138	N
F084956	Metagenome	111	N
F084957	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190352_100014713	F084956	N/A	MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFIGKIKSETQRTIMGKGNIMSELSCVSRFDELTHRYLKEGDQKDYHGTLSEVIQQFISVAGMDIESKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDNAGNPIYVTGDAVDEMAASNKEIYIEDDTILTEWDARQRAERELKIRNELTDAIEITLADLVYPVFGNVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190352_10001474	F055334	AGGA	MTSLVDKLNSVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMERLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
Ga0190352_10001478	F084957	AGGAGG	MNIEDYKKKKIEKVKCPSGLEVTINNITPYTLLKILDKLGMSARSEQIYSKSVIDELFKVSLKDPVVGRDIELDDFLREDYIFLHDLIFERVTLPEE