NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190306_1036602

Scaffold Ga0190306_1036602


Overview

Basic Information
Taxon OID3300021493 Open in IMG/M
Scaffold IDGa0190306_1036602 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)823
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F067298Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0190306_10366021F009582N/AEGGTGRAVKEARVDVVLQRVEEEIGDEINAYPTHVRRYGVNNIFQRTFAYLLGWQSNGKPKKVGVTTGGLLKVAVSGAGFEQIDTLEGTAGVNWSSALSFAWTPNRIRFEALDYPYLAKFSIDGVTWSDEVYVDGDMPRDFDINARYVKVRRYGGSDAKYFIIGMR
Ga0190306_10366022F067298AGGAGGMVVVIKEEDAWKIIRALNLKKRMRELEKEIGELQRRKAELQEEYESLGIDVQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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