Scaffold Ga0190336_1008742

Overview

Basic Information

• Taxon OID: 3300021492
• Scaffold ID: Ga0190336_1008742
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-9-10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1910
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055334	Metagenome	138	N
F076704	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190336_10087422	F055334	N/A	MTSLIDKLNSVMDTLKDEIDNVLSDYKVMRFLRFPTASDYFPICLIVPIRITPLYRGGLLEDDEYSIIELEIHLITKVPYDYKGERLLKDLDAVMEKLRTLRHDESKWYELDYKGGVDLEYAPVEKWILQSAVIHVKVEA
Ga0190336_10087423	F076704	AGGAGG	MAEYGAIKGWKNRIRIGLENAVNESIWHDGRDPLVNSFTMDTSVDIDKVFVIGTRDAVSMIEGVQEVTGSLERNLYSKNATYNEFIYAGNNSYLDLLTATGMYGESLQSCKILMNTTSNSASADYNRVIYGVKFHSYRTSTGAGDIVTESVDYDATNISTH